MmuEX6017592 @ mm10
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48242549-48245648:+
Coord C1 exon
chr5:48242549-48242617
Coord A exon
chr5:48244628-48244699
Coord C2 exon
chr5:48245577-48245648
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTCACTTTTCTCTTTCAGAGA
3' ss Score
11.68
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GTATCTGGATGGGAACCAGTTTACGCTGGTCCCGAAGGAACTCTCTAACTACAAACATTTAACACTTAT
Seq A exon
AGACTTAAGTAACAACCGAATAAGCACCCTTTCCAATCAAAGCTTCAGCAACATGACCCAGCTTCTCACCTT
Seq C2 exon
AATCCTCAGTTACAACCGTCTGAGATGTATCCCTCCACGAACCTTTGATGGATTGAAGTCTCTTCGGTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'42-50,'42-41,44-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(52.3=100)
A:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(9.1=20.0)
C2:
PF138551=LRR_8=FE(43.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTACGCTGGTCCCGAAG
R:
ACCGAAGAGACTTCAATCCATCA
Band lengths:
121-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types