RnoEX6042603 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66897942-66903168:-
Coord C1 exon
chr14:66903100-66903168
Coord A exon
chr14:66898869-66898940
Coord C2 exon
chr14:66897942-66898013
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTCACTTTTCCCTTTCAGAGA
3' ss Score
11.41
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GTATCTGGATGGGAACCAGTTTACACTGGTCCCGAAGGAACTCTCCAACTACAAACATTTAACACTTAT
Seq A exon
AGACTTAAGTAACAACAGAATAAGCACCCTTTCCAACCAAAGCTTCAGCAACATGACCCAACTTCTCACCTT
Seq C2 exon
AATTCTCAGTTACAACCGTCTGAGATGTATCCCTCCACGGACCTTTGATGGATTGAAATCTCTTCGTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(52.3=100)
A:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTACACTGGTCCCGAAG
R:
CGAAGAGATTTCAATCCATCAAAGGT
Band lengths:
119-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]