GgaEX1053887 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74600404-74603741:-
Coord C1 exon
chr4:74603673-74603741
Coord A exon
chr4:74600697-74600768
Coord C2 exon
chr4:74600404-74600475
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTGAATTTATTTTTTATAGAGA
3' ss Score
5.12
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
ATATTTGGATGGAAACCAGTTTACTCTTGTTCCTAAAGAGCTCTCCAACTACAAACATTTAACACTTAT
Seq A exon
AGATTTAAGTAACAACAGAATCAGCACTCTTTCTAATCAGAGCTTCAGCAACATGACTCAGCTGCTCACCTT
Seq C2 exon
AATTCTTAGTTACAACCGCCTGAGGTGTATCCCTGCACGGACTTTTGATGGGTTGAAATCACTTAGGTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'26-43,'26-42,28-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(52.3=100)
A:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAAACCAGTTTACTCTTGT
R:
AGCAACCTAAGTGATTTCAACCCA
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]