DreEX0073493 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24294220-24319547:-
Coord C1 exon
chr14:24319476-24319547
Coord A exon
chr14:24304322-24304393
Coord C2 exon
chr14:24294220-24294291
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTCTCATCTGCAGGCA
3' ss Score
12.11
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGACCTGAGCGAGAATCAGATTCAGGCTGTTCCTCGTAAGGCTTTCCGAGGGATCACCACTGTCAAGAACCT
Seq A exon
GCAACTGGACAGCAACCACATCAGCTGCATCGAAGATGGAGCCTTCCGAGCCCTGCGCGATTTGGAGATACT
Seq C2 exon
CACTCTCAACAACAACAATATCACCCTCATCCCACTGTCAAGCTTCAACCACATGCCAAAGCTGCGGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268_MULTIEX1-3/6=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(46.2=100)
A:
PF133061=LRR_5=FE(17.8=100)
C2:
PF133061=LRR_5=PD(16.3=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGAGCGAGAATCAGAT
R:
GTGTCCGCAGCTTTGGCAT
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]