HsaEX6101102 @ hg19
Exon Skipping
Gene
ENSG00000184347 | SLIT3
Description
slit homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:11087]
Coordinates
chr5:168250265-168310341:-
Coord C1 exon
chr5:168310270-168310341
Coord A exon
chr5:168271589-168271660
Coord C2 exon
chr5:168250265-168250336
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTGCTTTTCCACAGGCA
3' ss Score
11.57
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGATTTGAGTGAAAACCAGATCCAGGGGATCCCGAGGAAGGCGTTCCGCGGCATCACCGATGTGAAGAACCT
Seq A exon
GCAACTGGACAACAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCT
Seq C2 exon
TACCCTCAACAACAACAACATCAGTCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=28.0),PF127992=LRR_4=PU(8.7=16.0)
C2:
PF127992=LRR_4=FE(52.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGAGTGAAAACCAGATCCAGG
R:
AGAGTTCGGATCTTCGGCATG
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)