HsaEX6101102 @ hg38
Exon Skipping
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168823260-168883338:-
Coord C1 exon
chr5:168883265-168883338
Coord A exon
chr5:168844584-168844655
Coord C2 exon
chr5:168823260-168823331
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTGCTTTTCCACAGGCA
3' ss Score
11.57
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGAGATTTGAGTGAAAACCAGATCCAGGGGATCCCGAGGAAGGCGTTCCGCGGCATCACCGATGTGAAGAACCT
Seq A exon
GCAACTGGACAACAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCT
Seq C2 exon
TACCCTCAACAACAACAACATCAGTCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-'23-46,'23-44,26-46
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=28.0),PF127992=LRR_4=PU(8.7=16.0)
C2:
PF127992=LRR_4=FE(52.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGAGTGAAAACCAGATCCAGG
R:
AGAGTTCGGATCTTCGGCATG
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains