RnoEX0083484 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20320878-20377660:+
Coord C1 exon
chr10:20320878-20321603
Coord A exon
chr10:20357777-20357848
Coord C2 exon
chr10:20377589-20377660
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTTGCTTTCCCACAGGCA
3' ss Score
12.34
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTCAGTTCCAGCCCCAAATGCCAAGCGCAGAGAACTTGATTGTCAAAGACCTGCCCAAGAAATGGGAGGTTAGTTTGTGAGGGATGTCTTACAGGGAGGGGGGTAAGAATCTTGTCTGGGAGGTGCCAAAACCGAATGGGGTGCAGTGTGCTTAACAAATAATGTGTGTTGTCCTGGCTCCTGGCCTGGAGGTGAGAGACCACCCACAGTGCCTGCCCTGAAGCAAGTGGCTCCCACCTGCACCCCAGCACCTGATAACCATTTCTGCAGAAGTCTCCACTTGCAGAACAATGCGCAGGCTTCTAACAGCCAGGGGGCCTGAGACTAAACAGCCCCTCAGGCCCTTCTGGTGGGATTCACAGGCCGCCTCCCATGCGGGGAATGTGCTCTGGGTCTCTAACTGCTTTGCCTCTTCTCTTCTTGTTTAGAGATCTGAGCGAAAACCAGATCCAGGGCATCCCGAGGAAGGCGTTCAGGGGCGTCACGGGCGTGAAGAACCT
Seq A exon
GCAACTGGACAATAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCT
Seq C2 exon
CACCCTTAACAACAACAACATCAGCCGTATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=11.6)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTGGGTCTCTAACTGCT
R:
ATGTGGTTGAAGCTGGTGACC
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]