DreEX0074618 @ danRer10
Exon Skipping
Gene
ENSDARG00000004017 | spag1a
Description
sperm associated antigen 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9443]
Coordinates
chr19:12073525-12076857:+
Coord C1 exon
chr19:12073525-12073677
Coord A exon
chr19:12076018-12076029
Coord C2 exon
chr19:12076703-12076857
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCCAAATGTATTTTTACCAGGTG
3' ss Score
8.13
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GGCGCTGGAGCTCCACCCCTTCTCGCTGAAGCCCCTCCTCCGGCGAGCGATGGCCTATGAGTCTCTGGAGCGCTACAGGAAAGCCTATGTGGATTACAAAACAGTGCTGCAGATTGACATCAGTGTGCAGGCCGCTCACGACAGTGTACACAG
Seq A exon
GTGGAATTTATG
Seq C2 exon
AATCACTAAAATGCTGATTGAGCAGGACGGTCCTGACTGGCGAGAGAAGCTTCCAGAGATTCCAGCGGTTCCTCTTTCTGCTCAGCAGCACCGCAAAGAAGAGCCCAGCGCAGAGCTCCTGCAGGCCCGAGCAGAAAGAGCAGAACAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004017-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.419
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(8.0=11.5),PF0051523=TPR_1=WD(100=59.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000130537fB6229
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACATCAGTGTGCAGGCC
R:
GAAGCTTCTCTCGCCAGTCAG
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]