HsaEX1038599 @ hg38
Exon Skipping
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr8:100220279-100225339:+
Coord C1 exon
chr8:100220279-100220431
Coord A exon
chr8:100223662-100223753
Coord C2 exon
chr8:100225173-100225339
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCTCTTCCTCTCCAGGAA
3' ss Score
12.45
5' ss Seq
CTGGTAATA
5' ss Score
4.88
Exon sequences
Seq C1 exon
GGCTCTGGAACTTCATCCATTCTCTATGAAACCTCTTCTGAGGCGGGCGATGGCCTATGAAACTCTAGAGCAGTATGGGAAAGCTTATGTGGATTATAAAACAGTGTTGCAGATAGACTGTGGACTCCAGCTAGCAAATGACAGTGTTAACAG
Seq A exon
GAATCTTATATGTTAAATTTCCCTGCATATACTTATTTATTCCCTGGCAACACATCATCTCTTTTCAGCTGCTTCTTCCTTCCTCTCTGCTG
Seq C2 exon
GCTATCAAGAATTTTAATGGAGCTGGATGGACCAAATTGGCGGGAGAAGCTGTCACCTATTCCTGCTGTGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAAGAGATGATCTCAAAACAAGCAGGAGACTCCAGCAGCCATCGCCAGCAGGGCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450_MULTIEX1-4/9=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.268
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=57.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000251809fB26687
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGACTCCAGCTAGCAA
R:
TGGAGTCTCCTGCTTGTTTTGA
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains