GgaEX1054859 @ galGal4
Exon Skipping
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128197023-128200218:+
Coord C1 exon
chr2:128197023-128197175
Coord A exon
chr2:128198305-128198406
Coord C2 exon
chr2:128200043-128200218
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTCTCCTCTCTAGGCC
3' ss Score
13.15
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
AGCTCTGGAGCTTCAGCCATTTTCCCTTAAGCCTCTTCTACGACGAGCAATGGCATATGAGTCTATGGAGCGGTATCGACAGGCATATGTTGATTACAAAACAGTCCTACAAATAGACAGCAGCATACAAGTAGCAAATGACAGTGTTAATAG
Seq A exon
GCCTTCCTTATGTTTTTAGCTTCACTGCTCATTATTCTTTCCTCCCTGGCAACCCATCACCTTATTTCAGCTGCTTCTTCCTTCTTGTCTTCTCTTCTGCTG
Seq C2 exon
AATAACGAAGACTTTAATTGATCAAGATGGTTCTAGTTGGAGGGAAAAACTGCCACCGATTCCAGTTGTCCCTATTGCTGCTCAGCTAAACAGGTGGGATGGAGGAAACTTTACTTCAGAGGTTAAGCCAAAAAGTCCCACAGATATCAACAAAGAAGAACAGTTGCAGATGAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=61.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000025838fB12317
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTTCAGCCATTTTCCC
R:
CCCACCTGTTTAGCTGAGCAG
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]