RnoEX0084996 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75040341-75043802:+
Coord C1 exon
chr7:75040341-75040493
Coord A exon
chr7:75042835-75042915
Coord C2 exon
chr7:75043642-75043802
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGCCCCTCTCCTCTCCAGGAG
3' ss Score
11.33
5' ss Seq
CTGGTAATA
5' ss Score
4.88
Exon sequences
Seq C1 exon
GGCTCTGGAACTTCAGCCGTTCGCAGTGAAGCCTCTTTTACGGCGAGCGATGGCCTATGAGACTTTAGAGCAGTACAGGAGCGCGTATGTGGACTATATAACAGTGCTGAAGATAGACTGTAGGATCCAGCTGGCCAGCGACAGCGTTAACAG
Seq A exon
GAGTCATGGCGTGCTAGACTCCTTGCTTACCCCCGGCAGCACGGAATCTCTTTCCTGCCACCTCTTCCTTCCTCTTTTCTG
Seq C2 exon
AATAACAAGAATCTTAACAGAGCTAGATGGACCAAAATGGCGGGAGAGACTGCCCCCCATCCCGGCTGTGCCTGCATCTGAGCCTCTGAGAGTTTGGCACCCTGCTGCTGAGACCCCAGACCAAGATCCGTGTCCCAACAGCTGCACGCCCACCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.244
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000013801fB14113
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCGCGTATGTGGACTAT
R:
GTGCCAAACTCTCAGAGGCTC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]