DreEX0075598 @ danRer10
Exon Skipping
Gene
ENSDARG00000039220 | st6galnac5a
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-070705-488]
Coordinates
chr2:9367483-9461278:-
Coord C1 exon
chr2:9461072-9461278
Coord A exon
chr2:9388954-9389366
Coord C2 exon
chr2:9367483-9367590
Length
413 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTCTCTTTCTCACAGCCT
3' ss Score
10.01
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CGTGTTTTCCAGCGTCATGGAGTTGCCGTGTTTCTCGCCATCACCATGTGCACCAGTCTGTTGTTCGTGTATAACGTCAGCTACAATAATAATAGCACTACAGCAGCCAGCGCGTCTAAGGGCGCTTCAGGTGAGACAGTGGAGCCCACCAGAGCGGCCCGCGCGCATCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAG
Seq A exon
CCTTTGAAGATGCACTGCAGGAGCTGTGCGCTGGTCACTAGCTCTGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCAGAGTGCGTCATCCGAATGAATGACGCGCCCATAGCTCGTGGCTATGGGGCGGACGTGGGTCACCGCACGAGCCTGAGGGTCATTGCTCATTCCAGCATGCAGAGAGTGCTGCGCAGCCGCCATGAACTTCTCAACTCCAGCCAGGAAACAGTCTTCATATTTTGGGGACCCAGCAGTTACATGCGACGGGACGGGAAAGGCCTGGTTTATAACAATCTGCGGCTTATGAACCAAGTGCTCCCCAAACTCAAGGTCTACATTATCTCCTGGCAGAAAATGCTCCAGTTTGATGATTTATTCAAGAGGGAGACTGGTAAAGACAG
Seq C2 exon
GAGAATCACTAACTCATGGTTAAGCACAGGCTGGTTCACAATGACTATTGCCTTAGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCTCCAGATTTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039220-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(24.2=67.7)
A:
PF0077713=Glyco_transf_29=FE(49.8=100)
C2:
PF0077713=Glyco_transf_29=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTTTCCAGCGTCATGGA
R:
GCACCATGCCATAAACATTGATCC
Band lengths:
299-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]