HsaEX0062044 @ hg38
Exon Skipping
Gene
ENSG00000117069 | ST6GALNAC5
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:19342]
Coordinates
chr1:76868497-77050316:+
Coord C1 exon
chr1:76868497-76868742
Coord A exon
chr1:77044204-77044613
Coord C2 exon
chr1:77050258-77050316
Length
410 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCCCTGCCTTCCAGCCC
3' ss Score
9.16
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CGCCATGGTCTGGCAGTGTGTTTAGCGCTCACCACCATGTGCACCAGCTTGTTGCTAGTGTACAGCAGCCTCGGCGGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGGCGTCGGCCACCGGCAGCTCGCAGCCGGCGGCGGAGAGCAGCACCCAGCAGCGCCCCGGGGTCCCCGCGGGACCGCGGCCACTGGACGGATACCTCGGAGTGGCGGACCACAAG
Seq A exon
CCCCTGAAAATGCACTGCAGGGACTGTGCCCTGGTGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGGCGGGACGGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATTACTCGCCACAAGATGCTGCAGTTTGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAG
Seq C2 exon
GAAGATATCCAACACTTGGCTCAGCACTGGCTGGTTTACAATGACAATTGCACTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117069_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(28.4=72.0)
A:
PF0077713=Glyco_transf_29=FE(65.4=100)
C2:
PF0077713=Glyco_transf_29=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTCTGGCAGTGTGTTT
R:
GCTCCAGTGCAATTGTCATTGT
Band lengths:
303-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development