GgaEX0013241 @ galGal3
Exon Skipping
Gene
ENSGALG00000009021 | Q6ZXY4_CHICK
Description
NA
Coordinates
chr8:19965194-20022250:-
Coord C1 exon
chr8:20022017-20022250
Coord A exon
chr8:19970028-19970437
Coord C2 exon
chr8:19965194-19965301
Length
410 bp
Sequences
Splice sites
3' ss Seq
AATATGTATGTCTTTTGCAGCCT
3' ss Score
8.08
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGCCACGGGCTGGCCGTCTGCTTGGCGCTCACCACCATGTGCACCAGCTTGTTGCTCATGTACGGCGGCATCGGAGGCGGCGGCGGGGGCCACCCGGAGCCTCGGCGGCGGCAGCAGCAGCAGCAGCAGGTGGCGGCGGTGCCCAGCCGCCCTCCGGGACGCGGCCAGCACCGCCCAGCGCTCCCCGTCGGGGCCGGACTCCTGGAGGGCTACATCAGCGTCCTGGAGCACAAG
Seq A exon
CCTTTAAAAATGCACTGCAAGAGCTGTGCATTGGTAACCAGTTCTGGACACCTTCTGGGAAGTAAACAAGGTGACAGAATCGACGAGACGGAGTGCGTAATACGAATGAATGATGCACCTACTCGAGGTTATGGACAGGATGTTGGGAACAAAACAAGCCTTCGAGTCATTGCACACTCCAGCATTCAGAGGATTTTGCGAAATCGCAATGAACTCTTAAATATGAGCCACGGTGCTGTGTTCATCTTCTGGGGTCCTAGCAGCTACATGAGGAGAGATGGTAAAGGCTTGGTGTACAACAACCTGCAGCTGATGAATCAGATACTGCCTCAATTAAAAGCATACATGATTTCTCGCCACAAGATGCTTCAATTTGATGACCTTTTTAAACGGGAAACTGGGAAAGACAG
Seq C2 exon
GAAGATATCCAACACTTGGCTTAGCACGGGCTGGTTCACAATGACTATCGCCTTAGAGCTGTGTGACAGGATAAATGTTTATGGCATGGTGCCACCGGATTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009021-'1-7,'1-5,6-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(15.1=52.6)
A:
PF0077713=Glyco_transf_29=FE(50.0=100)
C2:
PF0077713=Glyco_transf_29=FE(13.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTTGGCGCTCACC
R:
CTGCAGAAATCCGGTGGCAC
Band lengths:
327-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]