HsaEX0062044 @ hg19
Exon Skipping
Gene
ENSG00000117069 | ST6GALNAC5
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:HGNC Symbol;Acc:19342]
Coordinates
chr1:77334182-77516050:+
Coord C1 exon
chr1:77334182-77334427
Coord A exon
chr1:77509889-77510298
Coord C2 exon
chr1:77515943-77516050
Length
410 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCCCTGCCTTCCAGCCC
3' ss Score
9.16
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CGCCATGGTCTGGCAGTGTGTTTAGCGCTCACCACCATGTGCACCAGCTTGTTGCTAGTGTACAGCAGCCTCGGCGGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGGCGTCGGCCACCGGCAGCTCGCAGCCGGCGGCGGAGAGCAGCACCCAGCAGCGCCCCGGGGTCCCCGCGGGACCGCGGCCACTGGACGGATACCTCGGAGTGGCGGACCACAAG
Seq A exon
CCCCTGAAAATGCACTGCAGGGACTGTGCCCTGGTGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGGCGGGACGGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATTACTCGCCACAAGATGCTGCAGTTTGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAG
Seq C2 exon
GAAGATATCCAACACTTGGCTCAGCACTGGCTGGTTTACAATGACAATTGCACTGGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCCCAGACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117069-'1-5,'1-4,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.671 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(28.4=72.0)
A:
PF0077713=Glyco_transf_29=FE(65.4=100)
C2:
PF0077713=Glyco_transf_29=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTCTGGCAGTGTGTTT
R:
CTGCAGAAGTCTGGGGGCA
Band lengths:
352-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)