GgaEX0013241 @ galGal4
Exon Skipping
Gene
ENSGALG00000009021 | SIAT7E
Description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:RefSeq peptide;Acc:NP_001264423]
Coordinates
chr8:18163193-18220245:-
Coord C1 exon
chr8:18220012-18220245
Coord A exon
chr8:18168027-18168436
Coord C2 exon
chr8:18163193-18163300
Length
410 bp
Sequences
Splice sites
3' ss Seq
AATATGTATGTCTTTTGCAGCCT
3' ss Score
8.08
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGCCACGGGCTGGCCGTCTGCTTGGCGCTCACCACCATGTGCACCAGCTTGTTGCTCATGTACGGCGGCATCGGAGGCGGCGGCGGGGGCCACCCGGAGCCTCGGCGGCGGCAGCAGCAGCAGCAGCAGGTGGCGGCGGTGCCCAGCCGCCCTCCGGGACGCGGCCAGCACCGCCCAGCGCTCCCCGTCGGGGCCGGACTCCTGGAGGGCTACATCAGCGTCCTGGAGCACAAG
Seq A exon
CCTTTAAAAATGCACTGCAAGAGCTGTGCATTGGTAACCAGTTCTGGACACCTTCTGGGAAGTAAACAAGGTGACAGAATCGACGAGACGGAGTGCGTAATACGAATGAATGATGCACCTACTCGAGGTTATGGACAGGATGTTGGGAACAAAACAAGCCTTCGAGTCATTGCACACTCCAGCATTCAGAGGATTTTGCGAAATCGCAATGAACTCTTAAATATGAGCCACGGTGCTGTGTTCATCTTCTGGGGTCCTAGCAGCTACATGAGGAGAGATGGTAAAGGCTTGGTGTACAACAACCTGCAGCTGATGAATCAGATACTGCCTCAATTAAAAGCATACATGATTTCTCGCCACAAGATGCTTCAATTTGATGACCTTTTTAAACGGGAAACTGGGAAAGACAG
Seq C2 exon
GAAGATATCCAACACTTGGCTTAGCACGGGCTGGTTCACAATGACTATCGCCTTAGAGCTGTGTGACAGGATAAATGTTTATGGCATGGTGCCACCGGATTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009021_MULTIEX1-4/6=1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(15.1=52.6)
A:
PF0077713=Glyco_transf_29=FE(50.0=100)
C2:
PF0077713=Glyco_transf_29=FE(13.2=100)
Main Skipping Isoform:
ENSGALT00000014679fB11918
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTTGGCGCTCACC
R:
CTGCAGAAATCCGGTGGCAC
Band lengths:
327-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]