DreEX0077473 @ danRer10
Exon Skipping
Gene
ENSDARG00000069339 | tbc1d24
Description
TBC1 domain family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050809-65]
Coordinates
chr24:39250479-39255992:+
Coord C1 exon
chr24:39250479-39250542
Coord A exon
chr24:39252499-39252594
Coord C2 exon
chr24:39255746-39255992
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCGTTCAATCTTGTTACAGGTC
3' ss Score
10.19
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTTTATGCACATTGTGAGGGATATGAGCCGACGCTGTTGCTCATCAGAACTACAGACAGAGAG
Seq A exon
GTCTGCGGAGCCTTCCTGTCCACTGATTGGGAAGAGAGAAAAAGGGGCGGGAACAAGCTGAGCTTCTTTGGCACTGGAGAGTGTTTTGTTTTCAGG
Seq C2 exon
ATGAAGCCAGAGATGGAGCGTTACGAGTGGGTCATTATCAAACACCCAGAGCTGGCCAAATCAGCTCAGTCCGCAGAGGATCAGAGCAGCGTGGAGGACAACGGGACGCCGCACTCTGGAGAAACTCTGGAGAAACCCACCACTGACTCGTCTCACCTCTCACCGTTCCTGTCCGCTCGACACTTCAACCTCAACTCCAGAAACACGTCCATGTTCATGGCTGGAAACGTCGACTCCATCATTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069339-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.349
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(22.8=100)
A:
PF0753411=TLD=FE(33.7=100)
C2:
PF0753411=TLD=PD(26.1=28.9),PF0753411=TLD=PU(42.5=41.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGCTGTTGCTCATCAGAA
R:
AGTCAGTGGTGGGTTTCTCCA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]