GgaEX0013533 @ galGal4
Exon Skipping
Gene
ENSGALG00000009217 | TBC1D24
Description
Gallus gallus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001257271]
Coordinates
chr14:13930688-13933412:-
Coord C1 exon
chr14:13933349-13933412
Coord A exon
chr14:13931354-13931449
Coord C2 exon
chr14:13930688-13930922
Length
96 bp
Sequences
Splice sites
3' ss Seq
GACCTTGCTGTTCACACCAGGTC
3' ss Score
7.86
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTCTATTCTCACAGTGAGGGACATGAGCCTACTCTTCTTCTCATCAAGACCACAGCAAAAGAG
Seq A exon
GTCTGCGGTGCTTATCTGTCCACCGACTGGAGCGAGCGCAGGAGAGGTGGGAACAAGCTGAGTTTCTTTGGAACTGGGGAGTGCTTTGTGTTCAGG
Seq C2 exon
CTGCAACCAGAAGTGGAACGCTACGAGTGGGTGATCATAAAGCACCCAGAATTGGCTGCAAGTGGTTCTGAGCCAGAAAATCATGCCTCGCCAGCTTCCAACGCCCTCTCCTTCAGAAGCACCCCCTCAGACCCATCAGATCGCCTTTCTCCCTTCTTATCAGCTCGGCACTTCAACTTACCGTCCAAAACAGCTTCCATGTTCATGGCTGGCAGCAGTGAATGCATCATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(19.4=100)
A:
PF0753411=TLD=FE(28.7=100)
C2:
PF0753411=TLD=PD(37.0=50.6),PF0753411=TLD=PU(43.9=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGTGAGGGACATGAGC
R:
CTTCTGAAGGAGAGGGCGTTG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]