RnoEX6046356 @ rn6
Exon Skipping
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13554130-13555240:-
Coord C1 exon
chr10:13555177-13555240
Coord A exon
chr10:13554820-13554915
Coord C2 exon
chr10:13554130-13554361
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACCCAGTTCCCTCCTCAGGTT
3' ss Score
7.63
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTCTATTTCCAGTGCGAAGGACATGAGCCCACACTCCTGCTCATCAAGACCACTCAAAAGGAG
Seq A exon
GTTTGTGGGGCTTACCTGTCAACAGACTGGAGTGAGCGGAATAAGTTCGGAGGCAAGCTGAGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGG
Seq C2 exon
CTGCAGCCGGAGGTGCAGCGCTATGAGTGGGTGGTCATCAAGCACCCAGAACTGACCAAGGCAGCATCCTTCAAGTCCTCAGAGGCTGCAGCCAATCCTTGCCTCATCAGCCACTCCGTCTCTTCAGACCCTGCCGACCGGCTCTCTCCTTTCCTGGCTGCCCGGCACTTCAACCTGCCCTCCAAGACCGAGTCCATGTTCATGGCTGGGGGCAACGACTGCCTCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(11.1=100)
A:
PF0753411=TLD=FE(16.3=100)
C2:
PF0753411=TLD=FE(40.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACTCCTGCTCATCAAG
R:
GTCGGCAGGGTCTGAAGAGA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]