HsaEX0063863 @ hg19
Exon Skipping
Gene
ENSG00000162065 | TBC1D24
Description
TBC1 domain family, member 24 [Source:HGNC Symbol;Acc:29203]
Coordinates
chr16:2549358-2550491:+
Coord C1 exon
chr16:2549358-2549421
Coord A exon
chr16:2549836-2549931
Coord C2 exon
chr16:2550269-2550491
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACCCAGACCTTTCCCCCAGGTG
3' ss Score
8.38
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTCTACTTCCAGTGTGAAGGACATGAGCCTACCCTCTTGCTCATCAAGACCACGCAGAAGGAG
Seq A exon
GTGTGTGGTGCTTACCTGTCCACAGACTGGAGTGAGAGAAATAAGTTTGGAGGCAAACTGGGCTTCTTTGGGACCGGAGAATGCTTTGTGTTTAGG
Seq C2 exon
CTGCAGCCTGAGGTGCAGCGCTACGAGTGGGTGGTGATCAAGCACCCCGAGCTGACCAAGCCCCCACCCTTGATGGCTGCCGAGCCCACCGCCCCACTCAGCCACTCCGCCTCCTCAGACCCCGCTGACCGCCTCTCGCCCTTCCTGGCCGCTCGCCACTTCAACCTGCCCTCCAAGACCGAGTCCATGTTCATGGCGGGGGGCAGCGACTGCCTCATCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162065_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.006 C2=0.218
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(23.3=100)
A:
PF0753411=TLD=FE(34.4=100)
C2:
PF0753411=TLD=PD(24.4=29.3),PF0753411=TLD=PU(39.5=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTGAAGGACATGAGCC
R:
GTCTGAGGAGGCGGAGTGG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)