GgaEX0013533 @ galGal3
Exon Skipping
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14678458-14681182:-
Coord C1 exon
chr14:14681119-14681182
Coord A exon
chr14:14679124-14679219
Coord C2 exon
chr14:14678458-14678692
Length
96 bp
Sequences
Splice sites
3' ss Seq
GACCTTGCTGTTCACACCAGGTC
3' ss Score
7.86
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTCTATTCTCACAGTGAGGGACATGAGCCTACTCTTCTTCTCATCAAGACCACAGCAAAAGAG
Seq A exon
GTCTGCGGTGCTTATCTGTCCACCGACTGGAGCGAGCGCAGGAGAGGTGGGAACAAGCTGAGTTTCTTTGGAACTGGGGAGTGCTTTGTGTTCAGG
Seq C2 exon
CTGCAACCAGAAGTGGAACGCTACGAGTGGGTGATCATAAAGCACCCAGAATTGGCTGCAAGTGGTTCTGAGCCAGAAAATCATGCCTCGCCAGCTTCCAACGCCCTCTCCTTCAGAAGCACCCCCTCAGACCCATCAGATCGCCTTTCTCCCTTCTTATCAGCTCGGCACTTCAACTTACCGTCCAAAACAGCTTCCATGTTCATGGCTGGCAGCAGTGAATGCATCATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(19.4=100)
A:
PF0753411=TLD=FE(28.7=100)
C2:
PF0753411=TLD=PD(37.0=50.6),PF0753411=TLD=PU(43.9=45.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGTGAGGGACATGAGC
R:
CTTCTGAAGGAGAGGGCGTTG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]