DreEX0077911 @ danRer10
Exon Skipping
Gene
ENSDARG00000035633 | tctn2
Description
tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
Coordinates
chr5:12909766-12912758:+
Coord C1 exon
chr5:12909766-12909866
Coord A exon
chr5:12910518-12910717
Coord C2 exon
chr5:12912638-12912758
Length
200 bp
Sequences
Splice sites
3' ss Seq
TGTGAATTTCCTCTTTTCAGGAC
3' ss Score
10.53
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
TAAATAAAACAGTCATTCCCAACCAAGTATTTCAGCCGCTCGGCCAGTGCCCGTGTGACGTTTCTCCAGGCGAGTGTGACATACGCTGCTGCTGTGATCAG
Seq A exon
GACTGTACTCGGGAAGTCCTGGGGCTCTTTGCAACTCAGTGTTTTCTTGGACCGTACGGGGGAAGTTTCAGTCCTGTTCCAGAGTATCAGTGTTCTGCTCAGCCTTCTGAAAATGACCCTGATTGGTTCCCCTTCCTCTGTGTCATCTCGCCCTCCTACAACAACCCTTTTCTGGGACTTTTTTATCATGGTGGAACTGT
Seq C2 exon
CTCTCCAAAACCAAGTCCATCATTCCAAGCCCCACAGATGACAGCTACTCTTCCCCCCATAAACTACCGCCAAGGGGATCCAATATTCACCAAGGATGACAAATACTTCACCATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035633-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.171
Domain overlap (PFAM):
C1:
PF0248011=Herpes_gE=PD(21.8=50.0),PF077736=DUF1619=PU(6.4=50.0)
A:
PF077736=DUF1619=FE(24.9=100)
C2:
PF077736=DUF1619=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAAACAGTCATTCCCAACCAAGT
R:
CTGTGGGATGGTGAAGTATTTGTCA
Band lengths:
220-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]