Special

GgaEX1057815 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr15:4978182-4979087:-
Coord C1 exon
chr15:4978987-4979087
Coord A exon
chr15:4978541-4978737
Coord C2 exon
chr15:4978182-4978305
Length
197 bp
Sequences
Splice sites
3' ss Seq
GATGTTGTTTTCCCTTCCAGGAG
3' ss Score
11.57
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
AAGACATGTCTGTCATCCCTAACCAGGTGTTTCAGCCCTTGGGCTCATGTCCTTGTGACTTGACTGATGGAGCTTGTGATGTTCGTTGTTGCTGTGATCCG
Seq A exon
GAGTGTACACCAGACTTGAAGCAGTTATTCGATGGATTGTGTTTCAGTGGAGTGTTTGGTGGGGATGTAAACCCACCTTTTGATCAGCTGTGCTCTACACAGACAACAGAATATACTCCCGATTGGTTTCCCCTCCTTTGTGTACAGTCTTCTCTTAACAATACACCATTTCTTGGCTATTTTTATGATGGCTCTAT
Seq C2 exon
TTCTGCACCCAGAGTTCCTCCATTTAGGATCCCTGTACAAGCTTCTCCTGGGAAACTCTTCACTGGTTACAGACCAGGAGATCCAATTATGACAGAAGATGATGAGTATTTTACCATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):

C1:
PF077736=DUF1619=PU(6.3=50.0)
A:
PF077736=DUF1619=FE(24.3=100)
C2:
PF077736=DUF1619=FE(15.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTCATCCCTAACCAGGT
R:
TGAGGGATGGTAAAATACTCATCA
Band lengths:
218-415
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]