GgaEX1057815 @ galGal3
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
NA
Coordinates
chr15:4978182-4979087:-
Coord C1 exon
chr15:4978987-4979087
Coord A exon
chr15:4978541-4978737
Coord C2 exon
chr15:4978182-4978305
Length
197 bp
Sequences
Splice sites
3' ss Seq
GATGTTGTTTTCCCTTCCAGGAG
3' ss Score
11.57
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
AAGACATGTCTGTCATCCCTAACCAGGTGTTTCAGCCCTTGGGCTCATGTCCTTGTGACTTGACTGATGGAGCTTGTGATGTTCGTTGTTGCTGTGATCCG
Seq A exon
GAGTGTACACCAGACTTGAAGCAGTTATTCGATGGATTGTGTTTCAGTGGAGTGTTTGGTGGGGATGTAAACCCACCTTTTGATCAGCTGTGCTCTACACAGACAACAGAATATACTCCCGATTGGTTTCCCCTCCTTTGTGTACAGTCTTCTCTTAACAATACACCATTTCTTGGCTATTTTTATGATGGCTCTAT
Seq C2 exon
TTCTGCACCCAGAGTTCCTCCATTTAGGATCCCTGTACAAGCTTCTCCTGGGAAACTCTTCACTGGTTACAGACCAGGAGATCCAATTATGACAGAAGATGATGAGTATTTTACCATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PU(6.3=50.0)
A:
PF077736=DUF1619=FE(24.3=100)
C2:
PF077736=DUF1619=FE(15.3=100)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTCATCCCTAACCAGGT
R:
TGAGGGATGGTAAAATACTCATCA
Band lengths:
218-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]