BtaEX0036003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54264007-54270096:-
Coord C1 exon
chr17:54269996-54270096
Coord A exon
chr17:54265171-54265361
Coord C2 exon
chr17:54264007-54264133
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCTCTACATCTTCTTTCCAGGAA
3' ss Score
9.74
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAAATGTGACTGTCGTTCCTAACCAGGTGTATCAGCCCCTTGGTCCTTGCCCTTGCAATTTGACAGCGGGGGCCTGTGACATTCGCTGCTGCTGTGACCAG
Seq A exon
GAATGCTCATCAGATTTAACAGCACTGTTCAGGGAGTCCTGTTTCCCTGGTGTTTTTGGAGGAGATGTTAATCCTCCCTTTGATCAGCTCTGCTCCATACAGATGTCACATGGAGTCCCCGACTGGTTTCCATTCCTGTGTGTGCAGCTTGCCAACTCACCCTTTCTCGGGTACTTCTACCATGGTTCCAT
Seq C2 exon
TTCCTCTGGACATCAAGTTTCCTTTGGCATATATTTGCATACTGATCTAAAAGACTTTTCAGATTTTGGTTACAAACAAGGAGACCCCGTTATGACAGTAGATAAGGCATATTTTACTATTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_MULTIEX2-5/9=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PU(6.3=50.0)
A:
PF077736=DUF1619=FE(23.2=100)
C2:
PF077736=DUF1619=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGTGACTGTCGTTCCTAACCA
R:
TGCCTTATCTACTGTCATAACGGG
Band lengths:
210-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development