BtaEX0036002 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54264007-54272241:-
Coord C1 exon
chr17:54272046-54272241
Coord A exon
chr17:54269996-54270096
Coord C2 exon
chr17:54264007-54264133
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTTTGTACTTTTCAGAAA
3' ss Score
9.43
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AATTCGTTGGAAGTGACCGTGAGGTTGAAAAGGGATATGCAGTCATGTTCCTCTAATGGGACAGATCCCTTCCTGGAGGCCCCATGTATTGTCCAAGCTCTTCTTGTTTCAGCCTTTCATAATACATCCTGTTTAGCACATCTGCTCATTCATGTGGAAATTTATGCCAACTCCTCTCTGGGCCAAAATGCATCAG
Seq A exon
AAAATGTGACTGTCGTTCCTAACCAGGTGTATCAGCCCCTTGGTCCTTGCCCTTGCAATTTGACAGCGGGGGCCTGTGACATTCGCTGCTGCTGTGACCAG
Seq C2 exon
TTCCTCTGGACATCAAGTTTCCTTTGGCATATATTTGCATACTGATCTAAAAGACTTTTCAGATTTTGGTTACAAACAAGGAGACCCCGTTATGACAGTAGATAAGGCATATTTTACTATTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_MULTIEX2-4/9=2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077736=DUF1619=PU(6.3=50.0)
C2:
PF077736=DUF1619=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCATGTTCCTCTAATGGG
R:
ACTGTCATAACGGGGTCTCCT
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development