HsaEX6069902 @ hg19
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124158162-124171582:+
Coord C1 exon
chr12:124158162-124158357
Coord A exon
chr12:124163736-124163836
Coord C2 exon
chr12:124171383-124171582
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTGTGTACTTTTCAGAGA
3' ss Score
8.9
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTCTGGACTGGTGTTCCTCCAATGAGACAGATTCCTTCTCAGAGTCCCCCTGTATCCTCCAGACCCTTCTGGTTTCAGCATCTCATAATTCATCCTGTTCAGCACATCTACTCATTCAAGTGGAAATTTATGCCAACTCTTCTCTGACCCATAATGCCTCAG
Seq A exon
AGAACGTGACTGTCATTCCTAACCAGGTGTATCAGCCCCTTGGCCCTTGTCCTTGTAATTTAACAGCTGGAGCCTGTGATGTTCGCTGCTGCTGTGACCAG
Seq C2 exon
GAATGCTCATCAAATTTAACAACGCTGTTCAGACGGTCCTGCTTCACCGGCGTGTTTGGAGGAGACGTCAATCCTCCTTTTGATCAGCTCTGCTCTGCTGGGACGACGACACGTGGTGTCCCCGATTGGTTTCCCTTTCTGTGTGTGCAGTCCCCCCTTGCCAACACACCCTTCCTTGGTTACTTCTATCATGGTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077736=DUF1619=PU(12.1=50.0)
C2:
PF077736=DUF1619=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCCTGTATCCTCCAGAC
R:
GAAACCAATCGGGGACACCAC
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)