GgaEX0026861 @ galGal4
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4930697-4931679:-
Coord C1 exon
chr15:4931484-4931679
Coord A exon
chr15:4931143-4931243
Coord C2 exon
chr15:4930697-4930893
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTAATTCTTTTCTAGAAG
3' ss Score
7.65
5' ss Seq
CCGGTATTT
5' ss Score
4.59
Exon sequences
Seq C1 exon
GGTGCATCCAAAGTGACTGTAACCTTCACTAGAAATCTGCAGTTATGTTTGCCCAATGCCACCGACTGCTGCACAGCGCCTCTCTGTGTGGTGGAAACACTTCAGGTTTTAGCTTGCAGTGGTTCAGTGATGCTGGCACATCTCCTAATTCAAGCTGAAATATATGCCAACTCTTCCTTTACGGGAAATGTGTCAG
Seq A exon
AAGACATGTCTGTCATCCCTAACCAGGTGTTTCAGCCCTTGGGCTCATGTCCTTGTGACTTGACTGATGGAGCTTGTGATGTTCGTTGTTGCTGTGATCCG
Seq C2 exon
GAGTGTACACCAGACTTGAAGCAGTTATTCGATGGATTGTGTTTCAGTGGAGTGTTTGGTGGGGATGTAAACCCACCTTTTGATCAGCTGTGCTCTACACAGACAACAGAATATACTCCCGATTGGTTTCCCCTCCTTTGTGTACAGTCTTCTCTTAACAATACACCATTTCTTGGCTATTTTTATGATGGCTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077736=DUF1619=PU(6.3=50.0)
C2:
PF077736=DUF1619=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTTTGCCCAATGCCACCG
R:
GCACAGCTGATCAAAAGGTGG
Band lengths:
246-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]