MmuEX0046778 @ mm9
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125052024-125057941:+
Coord C1 exon
chr5:125052024-125052219
Coord A exon
chr5:125053757-125053857
Coord C2 exon
chr5:125057745-125057941
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTGACATGTATACTTTTCAGAGA
3' ss Score
6.31
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGCACGCTGGAAGTGACCATAAGGTGGAAGAGGGGTCTAGACTGGTGCTCCGCAGACGAGACAGCCTCATTCTCAGAGCCCCCGTGTGTTCTGCAGATGCTGCTAGTTTCAGCCTCCCACAATGCATCCTGCTTAGCACATCTGCTCATCCAGGTGGAGATTTATCCCAACACATCTGTAACCCACAACGCATCAG
Seq A exon
AGAACATGACTGTCATTCCTAACCAAGTCTATCAGCCCCTGGGTCCCTGCCCGTGTGACTTAACAGCCAAGGCCTGTGACATTCAATGCTGCTGTGACCAG
Seq C2 exon
GACTGTCAGCCAGAAGTAAGAGAGCTGTTTGCACAGTCCTGCTTCTCCGGCGTGTTTGGAGGGCACGTCAGCCCTCCGTCCCATCATCACTGCGCTGTCAGCACTACTCACCAGACTCCTGACTGGTTTCCCCTCCTGTGTGTGCAGTCGCCACCCTCTACCTCGCCGTTCCTTGGTCACTTCTACCACGGTGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'4-4,'4-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF077736=DUF1619=PU(6.2=50.0)
C2:
PF077736=DUF1619=FE(23.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGCTGGAAGTGACCATAA
R:
GGAGAAGCAGGACTGTGCAAA
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: