RnoEX0013270 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37418900-37423737:-
Coord C1 exon
chr12:37423542-37423737
Coord A exon
chr12:37420637-37420737
Coord C2 exon
chr12:37418900-37419096
Length
101 bp
Sequences
Splice sites
3' ss Seq
CATATGTATGTACTTTTCAGAGA
3' ss Score
6.39
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACATGCTGGAAGTGACCGTAAGGTGGAAGAGGGGTCTGGACTGGTGCTCTCCAGATGAGACAGCCTCGTTCTCAGAGGCCCCATGCATCGTGCAGACTCTGCTGGTCTCAGCATCCCACAATGCATCCTGCTTAGCACATCTGCTCATCCAGGTGGAGATTTATCCCAACACGTCTGTGACCCACAATGCATCAG
Seq A exon
AGAACATGACTGTCATTCCTAACCAAGTCTATCAGCCCCTGGGTCCCTGCCCGTGTGACTTGACAGCCAAGGCCTGTGACATTCGCTGCTGCTGTGACCAA
Seq C2 exon
GACTGTCAGCCGGAGCTAAGAGAGCTGTTCGAACGGTTCTGCTTCTCCGGCGTGTTTGGCGGGTACGTCAGCCCTCCGTCCCACCATCGCTGTGCAGCCCGCACTACTCACCAGACTCCTGACTGGTTTCCCTTCCTGTGTGTGCAGTCACCACCCTCCACCTCTCCGTTCCTCGGTCACTTCTACCACGGCGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077736=DUF1619=PU(6.2=50.0)
C2:
PF077736=DUF1619=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGCTCATCCAGGTGGA
R:
CGTGGTAGAAGTGACCGAGGA
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]