BtaEX0036004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54262835-54265361:-
Coord C1 exon
chr17:54265171-54265361
Coord A exon
chr17:54264007-54264133
Coord C2 exon
chr17:54262835-54262976
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCATCGATTTGTAGTTC
3' ss Score
7.15
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAATGCTCATCAGATTTAACAGCACTGTTCAGGGAGTCCTGTTTCCCTGGTGTTTTTGGAGGAGATGTTAATCCTCCCTTTGATCAGCTCTGCTCCATACAGATGTCACATGGAGTCCCCGACTGGTTTCCATTCCTGTGTGTGCAGCTTGCCAACTCACCCTTTCTCGGGTACTTCTACCATGGTTCCAT
Seq A exon
TTCCTCTGGACATCAAGTTTCCTTTGGCATATATTTGCATACTGATCTAAAAGACTTTTCAGATTTTGGTTACAAACAAGGAGACCCCGTTATGACAGTAGATAAGGCATATTTTACTATTCCACAG
Seq C2 exon
GTGTCCCTGGCTGGGCAGTGCCTCTACAACGCTCCTGTGGCTTTCCTGCAAAATTTTGATGTTCAGTGCGTTACTAGCCTGGAGGAGTACCTAGAACGAGATGGAATTACCAGTGCAAAGATAAAGAATGGTGCTATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_MULTIEX2-6/9=5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(23.2=100)
A:
PF077736=DUF1619=FE(15.5=100)
C2:
PF077736=DUF1619=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTGTTTCCCTGGTGT
R:
TCCAGGCTAGTAACGCACTGA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development