DreEX6009633 @ danRer10
Exon Skipping
Gene
ENSDARG00000035633 | tctn2
Description
tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
Coordinates
chr5:12910518-12912998:+
Coord C1 exon
chr5:12910518-12910717
Coord A exon
chr5:12912638-12912758
Coord C2 exon
chr5:12912860-12912998
Length
121 bp
Sequences
Splice sites
3' ss Seq
CATACATTTTTTTTTTGCAGCTC
3' ss Score
10.21
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GACTGTACTCGGGAAGTCCTGGGGCTCTTTGCAACTCAGTGTTTTCTTGGACCGTACGGGGGAAGTTTCAGTCCTGTTCCAGAGTATCAGTGTTCTGCTCAGCCTTCTGAAAATGACCCTGATTGGTTCCCCTTCCTCTGTGTCATCTCGCCCTCCTACAACAACCCTTTTCTGGGACTTTTTTATCATGGTGGAACTGT
Seq A exon
CTCTCCAAAACCAAGTCCATCATTCCAAGCCCCACAGATGACAGCTACTCTTCCCCCCATAAACTACCGCCAAGGGGATCCAATATTCACCAAGGATGACAAATACTTCACCATCCCACAG
Seq C2 exon
AACACGGGAACAGGTCAGTGTGTGGAAAACGCACCAGTGGCATTTTTGGAGAACTTTGAGTTCCAGTGTGTGAGGAGGCTTCAGTTTTGTCCATCTCCATCTGATGACCTGAGGGTGGATGTTAAAGATGGACAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035633-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(24.9=100)
A:
PF077736=DUF1619=FE(15.1=100)
C2:
PF077736=DUF1619=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTTGGACCGTACGGGG
R:
ACTGAAGCCTCCTCACACACT
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]