GgaEX1057809 @ galGal4
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4929583-4930893:-
Coord C1 exon
chr15:4930697-4930893
Coord A exon
chr15:4930338-4930461
Coord C2 exon
chr15:4929583-4929718
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGGACTTATTTGCAGTTC
3' ss Score
5.82
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGTGTACACCAGACTTGAAGCAGTTATTCGATGGATTGTGTTTCAGTGGAGTGTTTGGTGGGGATGTAAACCCACCTTTTGATCAGCTGTGCTCTACACAGACAACAGAATATACTCCCGATTGGTTTCCCCTCCTTTGTGTACAGTCTTCTCTTAACAATACACCATTTCTTGGCTATTTTTATGATGGCTCTAT
Seq A exon
TTCTGCACCCAGAGTTCCTCCATTTAGGATCCCTGTACAAGCTTCTCCTGGGAAACTCTTCACTGGTTACAGACCAGGAGATCCAATTATGACAGAAGATGATGAGTATTTTACCATCCCTCAG
Seq C2 exon
CAGTCCCTGGCAGGGCATTGTGTTAGAAATGCCCCTGTAGCGTATCTGCAGGACTTGGATGTGAAGTGCCTTTCTGAGGCAGCATCTTACAAGGAAGGACTGCCCCATGATGTGAGAATCAACAGTGGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'10-13,'10-9,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(24.3=100)
A:
PF077736=DUF1619=FE(15.3=100)
C2:
PF077736=DUF1619=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTGTTTGGTGGGGATG
R:
TGGGGCAGTCCTTCCTTGTAA
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]