MmuEX6021018 @ mm9
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125057745-125060420:+
Coord C1 exon
chr5:125057745-125057941
Coord A exon
chr5:125058528-125058651
Coord C2 exon
chr5:125060279-125060420
Length
124 bp
Sequences
Splice sites
3' ss Seq
CAAATCTCTCGGTCTCTCAGTTC
3' ss Score
7.07
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACTGTCAGCCAGAAGTAAGAGAGCTGTTTGCACAGTCCTGCTTCTCCGGCGTGTTTGGAGGGCACGTCAGCCCTCCGTCCCATCATCACTGCGCTGTCAGCACTACTCACCAGACTCCTGACTGGTTTCCCCTCCTGTGTGTGCAGTCGCCACCCTCTACCTCGCCGTTCCTTGGTCACTTCTACCACGGTGCCAC
Seq A exon
TTCCCCCAGACATTCCCCCGGCTTTGAAGCCCATTTGCACTTCGACCTAAGAGACTTCGCGGATGCCAGTTACAAGCAAGGAGATCCCATTATGACCACGGAGGGGTATTTTACCATCCCCCAG
Seq C2 exon
GTGTCTCTAGCTGGGCAGTGTCTACAGGATGCTCCTGTGGCTTTCCTGAGGAATTTTGACAGTGTATGTACCATGGACCTGGAAGTGCACCAAGGACGAGATGAAATTGTCCTCGAGAACATGAAAATCCGCACAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(23.9=100)
A:
PF077736=DUF1619=FE(15.1=100)
C2:
PF077736=DUF1619=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCACAGTCCTGCTTCTCC
R:
GCACTTCCAGGTCCATGGTAC
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: