HsaEX0064284 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123686836-123690674:+
Coord C1 exon
chr12:123686836-123687035
Coord A exon
chr12:123688051-123688177
Coord C2 exon
chr12:123690533-123690674
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTATTGATTTTCAGTTC
3' ss Score
9.55
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAATGCTCATCAAATTTAACAACGCTGTTCAGACGGTCCTGCTTCACCGGCGTGTTTGGAGGAGACGTCAATCCTCCTTTTGATCAGCTCTGCTCTGCTGGGACGACGACACGTGGTGTCCCCGATTGGTTTCCCTTTCTGTGTGTGCAGTCCCCCCTTGCCAACACACCCTTCCTTGGTTACTTCTATCATGGTGCTGT
Seq A exon
TTCCCCCAAACAGGACTCTTCCTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAGACTTTGGTTACAAACAAGGAGATCCCATTATGACTGTAAAGAAGGCATATTTTACTATTCCGCAG
Seq C2 exon
GTGTCCCTGGCTGGGCAGTGTATGCAGAACGCCCCAGTGGCATTTCTTCACAATTTTGATGTTAAATGCGTTACTAATTTGGAACTATACCAAGAACGAGATGGTATTATCAATGCGAAGATAAAGAATGTTGCCTTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(24.1=100)
A:
PF077736=DUF1619=FE(15.3=100)
C2:
PF077736=DUF1619=PD(26.0=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCATCAAATTTAACAACGCTGT
R:
TGTGAAGAAATGCCACTGGGG
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development