HsaEX6069901 @ hg19
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124163736-124172724:+
Coord C1 exon
chr12:124163736-124163836
Coord A exon
chr12:124171383-124171582
Coord C2 exon
chr12:124172598-124172724
Length
200 bp
Sequences
Splice sites
3' ss Seq
CCTTTATGTTTGTCTTCCAGGAA
3' ss Score
12.29
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
AGAACGTGACTGTCATTCCTAACCAGGTGTATCAGCCCCTTGGCCCTTGTCCTTGTAATTTAACAGCTGGAGCCTGTGATGTTCGCTGCTGCTGTGACCAG
Seq A exon
GAATGCTCATCAAATTTAACAACGCTGTTCAGACGGTCCTGCTTCACCGGCGTGTTTGGAGGAGACGTCAATCCTCCTTTTGATCAGCTCTGCTCTGCTGGGACGACGACACGTGGTGTCCCCGATTGGTTTCCCTTTCTGTGTGTGCAGTCCCCCCTTGCCAACACACCCTTCCTTGGTTACTTCTATCATGGTGCTGT
Seq C2 exon
TTCCCCCAAACAGGACTCTTCCTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAGACTTTGGTTACAAACAAGGAGATCCCATTATGACTGTAAAGAAGGCATATTTTACTATTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PU(12.1=50.0)
A:
PF077736=DUF1619=FE(24.1=100)
C2:
PF077736=DUF1619=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGTGACTGTCATTCCTAACC
R:
CTGCGGAATAGTAAAATATGCCTTCT
Band lengths:
228-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)