RnoEX6064241 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37418251-37420737:-
Coord C1 exon
chr12:37420637-37420737
Coord A exon
chr12:37418900-37419096
Coord C2 exon
chr12:37418251-37418377
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCACCTGTTTTCCAGGAC
3' ss Score
10.36
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGAACATGACTGTCATTCCTAACCAAGTCTATCAGCCCCTGGGTCCCTGCCCGTGTGACTTGACAGCCAAGGCCTGTGACATTCGCTGCTGCTGTGACCAA
Seq A exon
GACTGTCAGCCGGAGCTAAGAGAGCTGTTCGAACGGTTCTGCTTCTCCGGCGTGTTTGGCGGGTACGTCAGCCCTCCGTCCCACCATCGCTGTGCAGCCCGCACTACTCACCAGACTCCTGACTGGTTTCCCTTCCTGTGTGTGCAGTCACCACCCTCCACCTCTCCGTTCCTCGGTCACTTCTACCACGGCGCCAT
Seq C2 exon
TTCCCCCAGACATTCCCCCGGCTTTGAAACCCATTCGCACTTGGACCTAAGAGACTTCTTTGCTGACGCCAGCTACAAACAAGGGGATCCCATTATGACCACTAATGGGTATTTTACCATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PU(6.2=50.0)
A:
PF077736=DUF1619=FE(23.9=100)
C2:
PF077736=DUF1619=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATGACTGTCATTCCTAACCA
R:
GGTAAAATACCCATTAGTGGTCATAA
Band lengths:
219-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]