DreEX0078846 @ danRer10
Exon Skipping
Gene
ENSDARG00000025920 | tiam1b
Description
T-cell lymphoma invasion and metastasis 1b [Source:ZFIN;Acc:ZDB-GENE-120221-1]
Coordinates
chr15:42524529-42532965:+
Coord C1 exon
chr15:42524529-42524615
Coord A exon
chr15:42529737-42529949
Coord C2 exon
chr15:42532865-42532965
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCACATTGAACTGATTGCAGGCC
3' ss Score
3.21
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTTCTCCATCTCTGTGGTGGAGGAGGACGGCGTTCAGCAGCTCTACATCACTGACGTGAGAGCTGGAGGATTAGCCTTCGCTAAAG
Seq A exon
GCCTGAATGCAGGAGATGAGATTCTCCAGCTGAACGGGAAGGACTCGCGGACTCTGACCTTCGCTGACATGAAGGTGGCGTTCGCTCAGGTCTCTTTGTCGCTCACAGTCAATACACTCCCCCCTGTGGAGCGCCGGCAGCTCTGCTATCTGCCGCCCAGGCGTTCCGACGCTGTGGACAATCTCTACACGGACATCTTCTCTCAGAGCCAAG
Seq C2 exon
AGGAGATCCTTGACGATGGCGTGGGTCTGATTGTGGAGACTTCAGGAGACAGTTTAGATGACGACTCGGAGCTCTTCGCCGAGTTTGATGACTACGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(38.7=100)
A:
PF0059519=PDZ=PD(49.3=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCCATCTCTGTGGTGGA
R:
CTTTCCGTAGTCATCAAACTCGG
Band lengths:
188-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]