GgaEX6004198 @ galGal4
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103813402-103827722:-
Coord C1 exon
chr1:103827636-103827722
Coord A exon
chr1:103823994-103824218
Coord C2 exon
chr1:103813402-103813505
Length
225 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTCTATGTTTCAGGCC
3' ss Score
11.07
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTTTCTCTCTGTCCTCTGTGGAAGAAGAAGGGATTCGTCGTCTGTATGTGAATGGTGTCAAAGAGACAGGCCTAGCTTTCAAGAAAG
Seq A exon
GCCTGAAAGCTGGTGATGAAATTGTGGAGATTAACAAGAAAGCTGCTGAAGATCTGGACTCAGCTTTGCTGAAAGACGTCCTCATTCAGCCTTCACTGTGTCTTACTGTGCGTACTTACCCTGAGATAGAGGAAGGGCAAAAATTAACGCAGCCACCACCACGTCGCTTGGAAAACCCATCTGACTTGAGTGACAGCACACTGGTGTTTTCTGGGAGCAACCAAG
Seq C2 exon
GGCATTCGCTTTGTGGCGACCCGGACAGCTCTGTTGAGACAGCACCAGAAGAGGCAGAAGCGCAAGACTTGGAGTCATCCGATGAGGCCGATAAGATGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-'37-33,'37-32,38-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.382 C2=0.914
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(36.2=100)
A:
PF0059519=PDZ=PD(46.2=48.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCTCTGTCCTCTGTGGA
R:
GCTCATCTTATCGGCCTCATCG
Band lengths:
188-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]