MmuEX0047304 @ mm10
Exon Skipping
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89821878-89837845:-
Coord C1 exon
chr16:89837759-89837845
Coord A exon
chr16:89833010-89833234
Coord C2 exon
chr16:89821878-89821981
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCCCATCATGCGTTGGCAGGCC
3' ss Score
5.57
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGTTTTTGCTTTCTTCTGTGGATGAAGATGGCATTCGAAGGCTCTACGTGAACAGTGTCAAGGAAACCGGGTTAGCTTCCAAGAAAG
Seq A exon
GCCTGAAGGCGGGGGATGAGATTCTCGAGATCAATAATCGTGCTGCTGGTACCCTGAACTCATCTATGCTCAAAGATTTCCTCTCACAGCCCTCCCTGGGCCTCCTGGTGAGGACCTACCCTGAGCCAGAGGGAGGCGTGGAGCTGCTGGAGAACCCTCCGCACCGAGTGGACGGCCCTGTGGACCTTGGCGAGAGCCCCCTCGCCTTCCTCACCAGCAACCCAG
Seq C2 exon
GGCACAGCCTCTCCAGTGAGCAGGGCAGCAGTGCTGAGACAGCTCCAGAAGAGGGCGAAGGACCGGACTTGGAGTCTTCTGATGAGACAGATCACAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.555 C2=1.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.8=100)
A:
PF0059519=PDZ=PD(45.7=48.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTTGCTTTCTTCTGTGGA
R:
TTGCTGCTGTGATCTGTCTCA
Band lengths:
190-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types