DreEX6088257 @ danRer10
Exon Skipping
Gene
ENSDARG00000078430 | tiam1a
Description
T-cell lymphoma invasion and metastasis 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]
Coordinates
chr10:25638909-25645557:-
Coord C1 exon
chr10:25645471-25645557
Coord A exon
chr10:25639926-25640138
Coord C2 exon
chr10:25638909-25639036
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTGTGATTGTGTGTGTTCAGGTC
3' ss Score
8.86
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTTTCTCTGTGGCAGTGGTAGAGGAGGATGGAGGCCAGCAGCTTCATATCACTGATGTGAAAGCAGGAGGTCTGGCATTTGCCAAAG
Seq A exon
GTCTGCGAGCCGGCGATGAGATCCTGAAGTTGAACAGTAAACCTGCGAGTGTATTGGAGTTGGCAGACATGCAGGCTGCGTTTGCTCTGCCCTCTCTCACCCTGACTGTCAGCACGCTGCCCGCTGCCGATCCGCACCAGTTGTGCCAGCTTCCTCCTCGCAGATCAGACGGAGCGCAAGACCTCTGCACTGACATCTTCTCCCAGAGTCAAG
Seq C2 exon
AGGACATCCTGGATGAAGGTCTTGGCCTTGTGCTGCATAGCCCCGATGACACAGGCGACGACAGGGTAAACCTGATGGCTGAGAGCCCCGCTGACAGCCTGGAGGATGAAATCGACTCGGCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078430-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.767
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(38.2=100)
A:
PF0059519=PDZ=PD(48.7=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTGGCAGTGGTAGAGG
R:
CTTGTGTGCCGAGTCGATTTC
Band lengths:
212-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]