RnoEX0090567 @ rn6
Exon Skipping
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29967593-29986237:-
Coord C1 exon
chr11:29986151-29986237
Coord A exon
chr11:29980445-29980669
Coord C2 exon
chr11:29967593-29967696
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTTCCATCGTGCGTTGGCAGGCC
3' ss Score
6.86
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGTTTTTGCTTTCTTCTGTGGACGAAGATGGCGTTCGAAGGCTCTACGTGAACAGCGTCAAGGAAACCGGGCTAGCTTCCAAGAAAG
Seq A exon
GCCTGAAGGCGGGGGACGAGATTCTTCAGATCAATAACCGTGCCGCTGGTACCCTGAACTCATCTATGCTCAAAGATTTCCTCTCACAGCCCTCTCTGGGCCTCCTGGTGAGGACCTACCCTGAGCCAGAGGGAGGAGTGGAGCTGCTAGAGAACCCACCCCACCGAGTGGACGGCCCTGTGGACCTTGGCGAGAGCCCCCTCACCTTCCTCACCAGCAACCCAG
Seq C2 exon
GGCACAGCCTCTCCAGCGAGCAGGGCAGCAGTGCTGAGACAGCTCCGGAAGAGGGCGAAGGACCGGACTTGGAGTCTTCCGATGAGACAGATCACAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569-'29-28,'29-26,30-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.496 C2=1.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.8=100)
A:
PF0059519=PDZ=PD(45.7=48.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTTGCTTTCTTCTGTGGACG
R:
TTGCTGCTGTGATCTGTCTCA
Band lengths:
190-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]