DreEX0080955 @ danRer10
Exon Skipping
Gene
ENSDARG00000101036 | traf2b
Description
Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
Coordinates
chr5:53779850-53787388:+
Coord C1 exon
chr5:53779850-53780070
Coord A exon
chr5:53786945-53787023
Coord C2 exon
chr5:53787290-53787388
Length
79 bp
Sequences
Splice sites
3' ss Seq
CAAAATATTTTTTTCATTAGCTC
3' ss Score
4.05
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
ATGATCAGCGCTGCAGGCACTCTGTGTAAATGGAAGGATATGGAACGTCCATCTTTACCATCTTCTCTGGACTCAACATTGCCTGGGATATCTCGAGAAGTGCTGTCGGTGTCCATGGAACCGAAATATCAATGCCAGCAGTGCAAAGATATTCTTAGGAAACCTTTCCAAGCACAATGTGGACATCGCTTCTGTGTGTTCTGTTTCAAACAACTGACCAG
Seq A exon
CTCAGGGCCCATACCCTGCGAAGCCTGTCGTGCTGAGGGTATATTTGAAGAGGAAACGTCTGTGCTTAATATTGCAGTG
Seq C2 exon
GCATTTCCTGATAATGCAGCACGAAGAGAAATTGATAGCTTGCCTGCTAAATGCCCAAATGAAGGTTGTAGTTGGTCTGGGACACTGAAGGACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101036-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(74.4=39.2)
A:
PF0009720=zf-C3HC4=PD(23.1=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCCAGCAGTGCAAAGA
R:
TGTCCCAGACCAACTACAACCT
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]