GgaEX1060164 @ galGal4
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
TRAF2 protein [Source:UniProtKB/TrEMBL;Acc:E1BTY1]
Coordinates
chr17:546624-547794:-
Coord C1 exon
chr17:547607-547794
Coord A exon
chr17:547100-547178
Coord C2 exon
chr17:546624-546722
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTTGTGTCTGCTAGTTC
3' ss Score
8.11
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGGCAGCAGCAAACTCGACTCCGCCCGGCTCTCTGGACCTGAGCCAGCCCGGGTTTGCGAAGGAGATCCTGGGAACTAAGCTGGAGGTGAAGTACCTCTGCTCGGACTGCAGGAACATATTGAGGCGGCCCTTCCAGGCACAGTGCGGGCATCGCTACTGCTCCTATTGCTTGAAGAAAATCATAAG
Seq A exon
TTCTGGACCTCAGAAGTGTGCGAGCTGCATTCAGGAAGGAATATACGAAGAAGGAATTTCTATTTTGGAAACGAGCTCT
Seq C2 exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(74.4=46.0)
A:
PF0009720=zf-C3HC4=PD(23.1=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGTACCTCTGCTCGGA
R:
CCACGTGCAGCCCTCATTAAT
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]