MmuEX0048689 @ mm10
Exon Skipping
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25530287-25539084:-
Coord C1 exon
chr2:25538866-25539084
Coord A exon
chr2:25537071-25537149
Coord C2 exon
chr2:25530287-25530448
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTGTGTTCCCACCAGCTC
3' ss Score
8.69
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GGCTTTGTGGTGTGTGGGGGTTGTAACTCACATGGCTGCAGCCAGTGTGACTTCCCCTGGCTCCCTAGAACTGCTACAGCCTGGCTTCTCCAAGACCCTCCTGGGGACCAGGTTAGAAGCCAAGTACCTCTGTTCAGCCTGCAAAAACATCCTGCGGAGGCCTTTCCAGGCCCAGTGTGGGCACCGCTACTGCTCCTTCTGCCTGACCAGCATCCTCAG
Seq A exon
CTCTGGGCCCCAGAACTGTGCTGCCTGTGTCTATGAAGGCCTGTATGAAGAAGGCATTTCTATTTTAGAGAGTAGTTCG
Seq C2 exon
AGCTGCCACGAAGGACTTTGCCCATTCCTGCTGACGGAGTGTCCTGCATGTAAAGGCCTGGTCCGCCTCAGCGAGAAGGAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCCAGCACTGCAGAGCACCCTGTAGCCACGTGGACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(74.4=46.0)
A:
PF0009720=zf-C3HC4=PD(23.1=33.3)
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAACTGCTACAGCCTGGCT
R:
GGAATGGGCAAAGTCCTTCGT
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types