DreEX6011170 @ danRer10
Exon Skipping
Gene
ENSDARG00000030173 | traf2a
Description
Tnf receptor-associated factor 2a [Source:ZFIN;Acc:ZDB-GENE-071120-2]
Coordinates
chr5:28165350-28167480:-
Coord C1 exon
chr5:28167233-28167480
Coord A exon
chr5:28166841-28166919
Coord C2 exon
chr5:28165350-28165448
Length
79 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTTTTCTCTCGCAGCTC
3' ss Score
10.8
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
AATGTGTAGAAAGATCCGCGTCTCTTCTCCGGAGCCTGGTCACATGCGCGCTCGGGAATAATGGCTGCACAGGAACCCTCACCACCATCTTCATTAGAAGGCAACAAACCTGGCTTTCCCAAGAAAATACTCGCCAACAAGCTGGAGGACAAGCATCTGTGCAATATCTGCCTGAAAATCCTTAGGAGACCGTTTCAGGCGCAGTGCGGACATCGTTTCTGTTCGTATTGTTTTAATAAAGCAGTGAG
Seq A exon
CTCCGGACCACAGAAATGCAGTGCCTGCATAAAAGAGGACATATTTGAAGAGCCAACATCAATTTTGAAACAGGGCTGT
Seq C2 exon
GCTTTTCCTGATAATGCTGCTAAGAGAGAAGTTGAAGCTCTTGAAGCTGTTTGTATCAATGAGGAGTGCAGCTGGACAGGCACCATCAAAGAATACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030173-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(74.4=46.0)
A:
PF0009720=zf-C3HC4=PD(23.1=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGACAAGCATCTGTG
R:
CCAGCTGCACTCCTCATTGAT
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]