BtaEX0037544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010497 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr11:106305206-106306095:-
Coord C1 exon
chr11:106305880-106306095
Coord A exon
chr11:106305453-106305531
Coord C2 exon
chr11:106305206-106305304
Length
79 bp
Sequences
Splice sites
3' ss Seq
AGGGCCGCTCCCCCCTCCAGCTC
3' ss Score
7.41
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GGCGTGGGCTTGGTGGGCTGCGGCGCTCATGGCTGCAGCCAGCGTGACCCCTCCCGGCTCCCTGGACCTACTGCAGCCCGGCTTCTCCAAGACTCTCCTGGGGACCAAGCTAGAGGACAAGTACCTGTGCTCGGCCTGCAAGAACGTGCTGCGCAGACCCTTCCAGGCTCAGTGTGGCCATCGCTACTGCTCCTTCTGCCTGAGCAGCATCCTGAG
Seq A exon
CTCCGGGCCCCAGAGCTGCGCCGCCTGCGTGCACGAGGGCATTTACGAGGAGGGCGTCTCAATCCTGGAGAGCAGCTCG
Seq C2 exon
GCGTTTCCGGACAATGCTGCCCGCAGGGAGGTGGAGAGCCTGCCGGCCGTCTGCCCCAGCGAGGGCTGCTCCTGGAAGGGGACCCTGAAGGACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010497_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(74.4=40.3)
A:
PF0009720=zf-C3HC4=PD(23.1=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTCTCCAAGACTCTCCT
R:
CAGGCTCTCCACCTCCCTG
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development