GgaEX1060164 @ galGal3
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
NA
Coordinates
chr17:927912-929118:-
Coord C1 exon
chr17:928895-929118
Coord A exon
chr17:928388-928466
Coord C2 exon
chr17:927912-928010
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTTGTGTCTGCTAGTTC
3' ss Score
8.11
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CAGGCTCTGCGCGTACAGCCGGAATTTTTTGTTCCCATGGCAGCAGCAAACTCGACTCCGCCCGGCTCTCTGGACCTGAGCCAGCCCGGGTTTGCGAAGGAGATCCTGGGAACTAAGCTGGAGGTGAAGTACCTCTGCTCGGACTGCAGGAACATATTGAGGCGGCCCTTCCAGGCACAGTGCGGGCATCGCTACTGCTCCTATTGCTTGAAGAAAATCATAAG
Seq A exon
TTCTGGACCTCAGAAGTGTGCGAGCTGCATTCAGGAAGGAATATACGAAGAAGGAATTTCTATTTTGGAAACGAGCTCT
Seq C2 exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(74.4=46.0),PF131921=Thioredoxin_3=PU(16.9=20.6)
A:
PF0009720=zf-C3HC4=PD(23.1=33.3),PF131921=Thioredoxin_3=FE(33.8=100)
C2:
PF131921=Thioredoxin_3=FE(41.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGTACCTCTGCTCGGA
R:
CCACGTGCAGCCCTCATTAAT
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]