DreEX0081942 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22785075-22830586:+
Coord C1 exon
chr17:22785075-22785187
Coord A exon
chr17:22790160-22790226
Coord C2 exon
chr17:22830473-22830586
Length
67 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTTGTGACTTTGCAGCAC
3' ss Score
8.66
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GACCATCAGCTGAGCGACGATACAGTCCTAAACCAGATTAATCTTGCAGAACCATCTGAGCATGAACTTCCAGACCTAAGCGCTGAGGAGCAAGCCTTCATACTGGCCACATG
Seq A exon
CACAGACTTCCAGAAGAATAATCCAGTTCACAAGCTGAATGATGAGGAGCTCCTGGCCTTCACCACG
Seq C2 exon
TGTTTGCTGTCTCAGCCTAAGTTCTGGGCTGTGGAAGTGACATCTCTGTGTCTGAGGACTAAGCTGGAGAGAGGAAGCTCACGGAGAGTTGAACGTGCCATGATGCAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918-'11-16,'11-10,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAGCTGAGCGACGATAC
R:
TCCAGCTTAGTCCTCAGACACA
Band lengths:
179-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]