RnoEX0094707 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21827441-21847543:-
Coord C1 exon
chr6:21847431-21847543
Coord A exon
chr6:21843552-21843618
Coord C2 exon
chr6:21827441-21827554
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTAAATTCAAAGCAC
3' ss Score
4.98
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
AATCTTGAGCTCAACGATGATACCGTTCTGAATGAAATAAAGTTAGCAGATAGTGAGCGGTTTCAGATGCCAGACCTGTGTGCTGAGGAGCTTGCTGTGGTCCTTGGAGTCTG
Seq A exon
CACAAATTTCCAGAAGAACAACCCAGTTCATAAGCTAACGGAGGAGGAGCTGCTGGCCTTCACATCG
Seq C2 exon
TGTTTACTTTCACAACCAAAGTTCTGGGCCATTCAGACCTCAGCCTTGATCCTCCGGACAAAACTTGAGAGAGGAAGCACACGGCGAGTGGAGCGGGCAATGAGGCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000006505fB15795
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCAGATGCCAGACCTG
R:
CTGGGTCTGCCTCATTGCC
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]