MmuEX0049497 @ mm9
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:75146992-75169696:+
Coord C1 exon
chr17:75146992-75147104
Coord A exon
chr17:75150402-75150468
Coord C2 exon
chr17:75169583-75169696
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTAATTCAAAGCAC
3' ss Score
6.36
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
AATCTTGAGCTCAATGATGATACTGTTCTGAATGAAATAAAGTTAGCAGATAGTGAACGGTTTCAGATGCCAGACCTGTGTGCGGAGGAGCTTGCCGTGGTCCTTGGAGTCTG
Seq A exon
CACAAATTTCCAGAAGAACAACCCAGTTCATAAGCTAACGGAGGAGGAGCTGCTGGCCTTCACATCG
Seq C2 exon
TGTTTACTTTCACAACCAAAGTTCTGGGCCATTCAGATGTCAGCCTTGATCCTCCGGACAAAACTTGAGAGAGGAAGCACACGGCGAGTGGAGCGGGCCATGAGGCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAACGGTTTCAGATGCCA
R:
CCTCATGGCCCGCTCCAC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: